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A possible origin of newly-born bacterial genes: significance of GC-rich nonstop frame on antisense strand.

机译:新生细菌基因的可能起源:反义链上富含GC的不间断框架的重要性。

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摘要

Base compositions were examined at every position in codons of more than 50 genes from taxonomically different bacteria and of the corresponding antisense sequences on the bacterial genes. We propose that the nonstop frame on antisense strand [NSF(a)] of GC-rich bacterial genes is the most promising sequence for newly-born genes. Reasons are: (i) NSF(a) frequently appears on the antisense strand of GC-rich bacterial genes; (ii) base compositions at three positions in the codon are nearly symmetrical between the gene having around 55% GC content and the corresponding NSF(a); (iii) amino acid compositions of actual proteins are also similar to those of hypothetical proteins from the GC-rich NSF(a); and (iv) proteins from NSF(a) of 60% or more GC content are flexible enough to adapt to various molecules encountered as novel substrates, due to the high glycine content. To support our proposition, using a computer we generated hypothetical antisense sequences with the same base compositions as of NSF(a) at each base position in the codon, and examined properties of resulting proteins encoded by the imaginary genes. It was confirmed that NSF(a) of GC-rich gene carrying about 60% GC content is competent enough for a newly-born gene.
机译:在来自不同分类细菌的50多个基因的密码子的每个位置以及细菌基因上相应的反义序列的密码子的每个位置检查了碱基组成。我们提出,富含GC的细菌基因反义链[NSF(a)]上的不间断框架是新生基因最有希望的序列。原因是:(i)NSF(a)经常出现在富含GC的细菌基因的反义链上; (ii)密码子中三个位置的碱基组成在GC含量约为55%的基因与相应的NSF(a)之间几乎是对称的; (iii)实际蛋白质的氨基酸组成也与富含GC的NSF(a)的假定蛋白质的氨基酸组成相似; (iv)由于甘氨酸含量高,来自NSF(a)的GC含量为60%或更高的蛋白质具有足够的柔韧性,以适应各种遇到的新型底物分子。为了支持我们的主张,我们使用计算机在密码子的每个碱基位置上生成了与NSF(a)具有相同碱基组成的假想反义序列,并检查了由假想基因编码的所得蛋白质的特性。证实具有约60%GC含量的富含GC的基因的NSF(a)足以胜任新生基因。

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